BtaEX0041501 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1519751-1522678:+
Coord C1 exon
chr14:1519751-1519867
Coord A exon
chr14:1521137-1521373
Coord C2 exon
chr14:1522561-1522678
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCCTGTTCATTTCAGATT
3' ss Score
10.48
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CAGGATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
Seq A exon
ATTCTACAGTTGGGACTGATGGTGAGCAGGACATGGACAGTTTTAAATCAGAATCCGGGGGGGTCATGGTCAAAACCTTGCCCCAGAACTTTCCTCAGAGTCCTGGCTTTGGAAACACCTCAGATCCTGAAGTCTGTTCACAGAGACAGCCAACCTCCCTCTTCCATAAAAACTTCTTGAACATGGGGACCATGGGTCCCAGGAAGGCCTTCACCGAGGACGAGTTCCAGGGTCATG
Seq C2 exon
CACCAGATTATCCATGCCGGGGTGAAGCCCTATGGATGCAGCGAGTGCGGGAAGGCCTTCAGCCGGAGCTCATACCTGATCGAGCACCAGAGGATCCACACTCGTGCCCAGTGGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.242 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCCTGGTCTTCAAGCCTG
R:
GGTACCACTGGGCACGAG
Band lengths:
233-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development