BtaEX0041520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2754633-2758489:+
Coord C1 exon
chr25:2754633-2754759
Coord A exon
chr25:2755817-2756316
Coord C2 exon
chr25:2758379-2758489
Length
500 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTGTTCTTCCACAGCTG
3' ss Score
11.35
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
AGCTTATTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAAGAAAACTATGAGACTGTCATCTCTCTAG
Seq A exon
CTGTGCCTGCTCACCAGCTCCTAGCCTTTCCTAAGCAGACAAATACCAGTGAGTGGACAGTGGCACCTGAGCTCATTCTGCCTGAGTCCCAGGTGAGCTGTACTTTTCAGCTTCTTGGGGCTGCCTCTCCCTGCTGCCCATGACCTGCCCTGCCCAGCAGGTGCTCAGAGGTGTCCCAGATGTTCCCCCTGGGGAACTGAGTACCTCCTGGGCTGTTTGCTGATCCCTTGCCTACTTTCTGCCATCTTGCTTTAAAATAATTCATGTGCTATTAGTTCCTTTAGTGACTGGCTTACCTTGTAGTTCATGGCTTAGAAGATTGGGCTGCTTCTGTAGTGGCAAGTACTGAGCTGAAGCCCATTCTCTTCTTTAGAGCTTGTTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGACGTAATGCAAGAAAACTATGAGAGTGTCATCTTTCTAG
Seq C2 exon
CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000053980fB8062
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTATTGACATTTGAAGAAGTGGC
R:
CTGCAGGCAGCTCTTCAGAAC
Band lengths:
238-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development