BtaEX0041533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002810 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:HGNC:22213]
Coordinates
chr4:113243382-113257336:-
Coord C1 exon
chr4:113257223-113257336
Coord A exon
chr4:113256895-113256958
Coord C2 exon
chr4:113243382-113243633
Length
64 bp
Sequences
Splice sites
3' ss Seq
GAAAGGCGTTCCCTTGTCAGGAT
3' ss Score
5.04
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAACGAGGGGAGAGGCCGGCCATGCAGGAGCAGGAGGACTCTGAGGAGGGCGAGGCGCCTGCCGATCCCAGTGCCG
Seq A exon
GATGCTGACGCTGGTGCAGCCTCGAGCTCCCCAGAGAAGGGCCACGTCCCTGGGCCTGCGGCCG
Seq C2 exon
CTCACGATGGGATCGTGATTAAGATCGAGGTGCAGACCAACGACGAGGGCTCGGAGAGCCTGGAGACGCCGGAGCCCCTGATGGGCCAGGTAGAGGAGCATGGCTTCCAGGACTCGGAGCTGGGGGACCCGTGTGGCGAGCAGCCGGACCTGGACATGCAGGAGCCGGAAAACCCGCTGGAGGCATCCACGGAGGGCTCAGGCGAGTTCAGCGAGCTCAAGCAGATGCTGGTGCAGCAGAGGAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002810_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=1.000 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000003635fB8065
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGAGGACTCTGAGGAG
R:
CTCCTCTACCTGGCCCATCAG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development