BtaEX0041535 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47314468-47318725:+
Coord C1 exon
chr18:47314468-47314552
Coord A exon
chr18:47315424-47315579
Coord C2 exon
chr18:47318599-47318725
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATTTAAAAAACAGAAA
3' ss Score
4.62
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATCTGGCTTATCTGAACTCTGCAGATCTCTAACAGAAATCTTGAAAAGGACTGACCAGTGCTTGCAGTTCAAAACAATGGCCCAT
Seq A exon
AAAACAATATACACGAAGTCTTGTTGTATTCCAAATACAATTGCTGAACCATCAGAACCATCTGCGGATGTTTTGAAATGCTTGCAAATATCATCAAAGGGGATGTGTATAATTGGTGTTGCTGGCAGAAGGGAAGGCATAAGAGCATCGTACAGA
Seq C2 exon
GGTTCAGTGACTTTCAGAGATGTGGCCATTGACTTCTCACAGGAAGAATGGGAATTCTTGGACTCAGCACAGAGGGACTTATATAGGGATGTGATGTGGGAGAATTACAGCAACTTCATCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCTTATCTGAACTCTGCA
R:
AGTGAGATGAAGTTGCTGTAATTCT
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development