BtaEX0041540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84851629-84910292:-
Coord C1 exon
chr8:84910166-84910292
Coord A exon
chr8:84856547-84856642
Coord C2 exon
chr8:84851629-84852240
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAAGTATTTCCCATTTACAGGGT
3' ss Score
7.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCATCAGTGTCATTCAAGGATGTGACTGTGGAATTCACCCAGGAAGAGTGGCATCAGATGGACTCTGCTCAGAGGACCTTGTACAGAGATGTAATGCTGGAGAACTACAGCCACCTCGTCTCAGTGG
Seq A exon
GGTACTGCTTTACAAAGCCAGAACTGATCTTCATGTTGGAACAAGGAGAAGATCCATGGTTATTAGAGAAAGAATTTATAAACAGAAGTTCCCCAG
Seq C2 exon
AAGAATTCCAACCTGATGAACTCTTAGAGGAGAGCCTAGAAAACCAAGGCAAACATTTGAGGCAAGTTTTATTCATCAACAAATCATTGACTATGGAACAAGAAATATCAGGAAAACCATGTACTCTGGACATAAACATTTTTCCTGCAGAAACAATACCCTGTAAATTTGACACTACAGGGTCTACTTACTTGCTTCTTAGCTCACTGGCCCCACACTGTCAATATTCAAAAAAGACTTATGCGCCTAATGTATGTGAGAATTGGCTTTTCAGTATTAAGGACGGCAGAACTAATACTGGAGAGAATTCTTTTGTTTGTAGTAAAAATGTGAAAACCTTTGGACATAAAGACAAAGTTATCCAGCATCAGACAATTCAGACTTTGCAGCAAGCTTTTGAATATAATGAATGTAGAAAAGATTTTCTTGAAAAGACTGCCCTTGTTATGTCTAAGAGTACCCATCCAAAAATGAAACCTTATGAATTCAATAAATTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGGAATTCACCCAGG
R:
TGCCTCAAATGTTTGCCTTGG
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development