BtaEX0041547 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016721 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr7:14012314-14014696:-
Coord C1 exon
chr7:14014573-14014696
Coord A exon
chr7:14014338-14014398
Coord C2 exon
chr7:14012314-14013955
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTGGGGTCTGCATTTTAGGGG
3' ss Score
8.19
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTCTGCTGGGGCCTTCGCAGAAGAAACTCTACAGAGATGTGATGCGGGAAACTTTGAGTAACCTGGCCTTAATAA
Seq A exon
GGGATAAATGGGAGGACCATAACACTGATGATCAGTACAAGAACCAGGAAAGAAATCTGAG
Seq C2 exon
AAGTCATATATTACAGAGACTCTGTGAAAGTAAAGAAGGTAGTCAAGGTGGAGAAAACAGCGGCCTTATTCCAAATCTTAATCTGAACACGAAAAATTCTACTAAACCATGGGAATGCAGTGTGTGTGGAAAGGTCTTCATGAGTCGTTCATCCCTTAATAGGCACCTGAGATCTCACACTGCACCCAAACCATCCAAGTATCATCAGGAATATGGAAGGAAGCCTTATAAATGTAGAGTGTGTGGGAAAGCCTTCAGTTATCTCCAGCCTTTCCAAAAACATGAAAGTAATCATGGTATAGAAAAATCCTATAAATGTAAGGAATGTGGGAAATCCTTTAGATATCGTCAATCTGTTCGAAAACATGAACGAACTCACACTGGAGAGAAACCCTATCAGTGTAAACAGTGTGGAAAAGCCTTTCGATACCATCAAACCTTTCAAACGCATGAAAGAACTCACACAGGAGAGAAACCTTATGAATGTAAGCAATGTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016721-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.524 C2=0.068
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGGGCTCTGCTGG
R:
CCGCTGTTTTCTCCACCTTGA
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development