BtaEX0041564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39366653-39368532:+
Coord C1 exon
chr18:39366653-39366819
Coord A exon
chr18:39367015-39367376
Coord C2 exon
chr18:39367562-39368532
Length
362 bp
Sequences
Splice sites
3' ss Seq
TCGTGTCTTTCCTCGATCAGAAT
3' ss Score
7
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CACACTGCAGCCGTGGTGAGCGCCAAGAGCTACATGTGTCCCGTCTGTGGCCGGGCCCTCAGCTCCCCAGGGTCACTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGGTCGAACTGTGCTGTGTGTGGAGCCCGTTTCACTAGCCATGCCACATTTAACAG
Seq A exon
AATATCTTCATCTGGAAAGAGACGTGGGAAGTCCAAGAACCTTCATGATAAAGCTTGGAGAAAGAAGTTAGAGAGGCCATGAGGACCCTCACAGGAGGACAGTCTCCACCGTGTCCAGGAAGACTGGGGCTGTGTGCACTGTCCGCACCGTTTGCTAGTTACTGTACAAGGCAGGGTCGGGCAGGGGGAGGTGAAGCCAGTGGACCGGACCTCCCCTACAGCAGCTGCCACCTCAAGGAGGACTGCCCTGCACAACTCCTAAAGACACCATCAGTTTGGCTTGAACAGGACTGCACATCATAAGGGCTCCTCCTCTGATTTCTGGTGCTTGCTGTGGCAGTTGGCTCAGTCCCTAACTCCAG
Seq C2 exon
TGAGAAACTCCCTGAAGTCCTTAATGTGGAATCCCTACCACCAGCCCACAGTGAAGGCCCCTCCAGTGCCGAGGGGAAGGACATTGCCTTTACTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTATGCAACAACTGTGCTGCCTACCGGAAGCTGCTGGAAGCCCAGACCCCCAGCGTCCGCAAATGGGCCTTGCGTCGGCAGAATGAGCCTTTGGAAGTCCGGCTGCAGCGACTGGAACGAGAGCGCACAGCCAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGAGAAGCCAAGCGCCTGCAGCGCATGCAGGAGACGGATGAGCAGCGGGCACGCCGGCTGCAACGAGATCGGGAGGCCATGAGGCTGAAGCGAGCCAACGAGACCCCTGAGAAGCGGCAGGCCCGGCTCATCCGGGAGCGGGAGGCCAAGCGGCTCAAGAGGAGGCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.852 C2=0.683
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PD(58.6=60.7),PF127732=DZR=FE(69.6=100),PF116003=CAF-1_p150=PU(3.9=12.5)
A:
PF127732=DZR=PD(0.1=0.0)
C2:
PF127732=DZR=PD(1.3=0.5),PF116003=CAF-1_p150=PD(95.5=78.1)
Main Inclusion Isoform:
ENSBTAT00000032310fB8072
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCACTAGCCATGCCACA
R:
CTTGGCTTCTCGGTCCCTCAT
Band lengths:
357-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development