BtaEX6006470 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84689654-84692188:+
Coord C1 exon
chrX:84689654-84689774
Coord A exon
chrX:84690522-84691207
Coord C2 exon
chrX:84692145-84692188
Length
686 bp
Sequences
Splice sites
3' ss Seq
TTTCTACCCTTAATCTACAGCCC
3' ss Score
8.59
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGCCATTTAAAGGGGCCGCGACCCCTGTCCCGGCTGCTAGGGAGGGAGGTGGAGAAGGAGCGCGGGGCCGTCGCTGACTGCAGTTCTAGGCTTGTAGCGGTTACACTAACCCTGCCGCAG
Seq A exon
CCCACATCCAGTCATCCTCATGGATCCCAGTGATTTCCCCAGTCCGTTTGACCCATTGACCCTGCCAGAGAAGCCCTTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCTCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAGAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGCTGCTGGGGCTGGGGGGGCTACTCTATAAAGCCCCCTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGGACCCTTGCATGGGATGCAAGCGATCAGACCCTAGAGCCTGGACCAGGGGGCAGGACCCCTGAGGTGGTGCCACCTGACCCAGGGGCTGGGGCAAATCCCTCTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACTCTGCAATCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACAGGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAACCACAGAGCCCAAATGGCCCCCCCAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGAGCCCTAGCCCCCCTGCACACCCTTCCTTGCCAG
Seq C2 exon
GAGATGGCCTGACTGGGAAGGCGAGTGAGAAGCCGCCTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'5-2,'5-0,8-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]