BtaEX6012185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120989143-120990160:+
Coord C1 exon
chr2:120989143-120989187
Coord A exon
chr2:120989363-120989472
Coord C2 exon
chr2:120990005-120990160
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGCAGCCCCTCCCCCTGCAGCAG
3' ss Score
7.4
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
AATGAGCGAGAGGAGGCCCTCACCACCAACGTCTGGATAGAAATG
Seq A exon
CAGTGGTGTGACTACCGGCTTCGCTGGGACCCTCGAGACTACGGCGGCCTGTGGGTGCTTCGGGTGCCATCCACCATGGTGTGGCGGCCAGACATCGTGCTGGAGAACAA
Seq C2 exon
CGTGGACGGCGTGTTCGAGGTGGCCCTCTACTGCAACGTGCTCGTGTCTCCCGATGGCTGTGTGTACTGGCTGCCGCCGGCCATCTTCCGCTCCTCCTGCCCCGTCTCTGTCACCTTCTTCCCCTTCGACTGGCAGAACTGCTCCCTCATCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'3-5,'3-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.5=100)
A:
PF0293118=Neur_chan_LBD=FE(16.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCGAGAGGAGGCCC
R:
AAGATGAGGGAGCAGTTCTGC
Band lengths:
198-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]