BtaEX6020588 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000507 | NR4A1
Description
Bos taurus nuclear receptor subfamily 4, group A, member 1 (NR4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075911]
Coordinates
chr5:27981924-27992869:-
Coord C1 exon
chr5:27992763-27992869
Coord A exon
chr5:27992103-27992209
Coord C2 exon
chr5:27981924-27982801
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGTCACGTCTCTTCCCGCAGGGC
3' ss Score
9.78
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CAGGCGCTGGGCCATCAACTTGGGCGGACCGGGGCGGGGAGAGGAGTTACTGTAAGTGGATGAGGCAGGTGTTCCTGGTCAGCCGGAGGTCTGGATGCAGGAAGCAC
Seq A exon
GGCTCCTCAAGGCCACCAGGAAGAGGCCCCGACCAGCCCTGGGAGTCTCCCTTGGTGCAGCTGTCCAGGACCTCTGAGAATCAAAGCAGGTCGTGTGGAGGAAGCTG
Seq C2 exon
AGATGCCCTGTATCCAAGCCCAGTATGGGACACCAGCACCAAGCCCAGGACCCCGTGACCACCTGGCAGGCGACCTCCTGACCCCTGAGCTCAGCAAGCCCACCATGGACCTGGCCAGCCCCGAGGCAGCCCCCGCTGTCCCTACCGCCTTGCCCAGCTTCAGCACCTTCATGGACGGCTACACAGGGGAGTTTGACACCTTCCTCTACCAACTGTCAGGCACAGCCCAGCCGTGCTCCTCTGCCTCCTCCTCGGCCTCCTCCACGTCCTCATCGTCAGCCACCTCCCCAGCCTCTGCTTCCTTCAAGTTCGAGGACTTCCAGGTGTACGGCTGCTACCCTGGCACGCTGAGTGGCCCTCTGGACGAGACCCTGTCCTCCAGCGGCTCTGACTACTATGGCAGTCCCTGCTCTGCACCGTCACCATCCACGCCCAGCTTCCAGCCTCCTCAGCTCTCTCCCTGGGATGGCTCCTTTGGCCCCTTCTCGCCCAGCCAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000507-'1-7,'1-1,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.572
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(38.6=9.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGGAGAGGAGTTACTGTA
R:
GTGTAGCCGTCCATGAAGGTG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]