BtaEX6020753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017395 | LASS5
Description
Bos taurus ceramide synthase 5 (CERS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102132]
Coordinates
chr5:29925285-29927957:+
Coord C1 exon
chr5:29925285-29925415
Coord A exon
chr5:29926101-29926158
Coord C2 exon
chr5:29927907-29927957
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCTACTCTTCACCCATCTAGGTG
3' ss Score
9
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TATCCTGATGAGAAAAGGCTGGAGGGCCTGTCAAAGCAACTAGACTGGGATGTCCGAAAAATCCAATGCTGGTTTCGCCATCGGAGGAATCAGGACAAGCCCCCAACGCTCACTAAATTTTGTGAAAGCAT
Seq A exon
GTGGAGATTCACTTTTTATTTATGTATATTCTGCTACGGAATTAGATTTCTCTGGTCG
Seq C2 exon
TCACCTTGGTTCTGGGACACCCGACAGTGCTGGCACAGTTACCCTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017395-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(62.3=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGAAAAGGCTGGAGGGC
R:
GGTGTCCCAGAACCAAGGTGA
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]