BtaEX6024034 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX70]
Coordinates
chr5:100929723-100938555:-
Coord C1 exon
chr5:100938414-100938555
Coord A exon
chr5:100931191-100931319
Coord C2 exon
chr5:100929723-100929898
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATGACATTTGTATTTACAGGCA
3' ss Score
8.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACATTTCCTGCTTTGCAACGACTGAGAAAAGGTACCACCAAATCCTTTTTTTCAAACAGAAACATGACATCAACAGAGGTGTTTTTGAAAATCTTAGAGACAGACCCTACCTATAGAGAGAACACAGAGGCGTGGAGATCTG
Seq A exon
GCAAAGGTCTCCAAAAGAAATGCCTAGCAATTACCTCTTCTGTTACACCTGCCACGCTTTGCTGCTGCATCCTGATTATTCTTATACTTGTAGCTCTAAATGTGGTGACACTTTCCGTTCTTCTGGCAG
Seq C2 exon
TGAGAAGCAGAGAGACAGACTTACAAGTTGTGTATGTCACCTGCCCAAAAGGATGGATTGGATTTGGGAATAAGTGTTTTTATTTTTCTGAAGACTCAGAGAATTGGACATTGAGTCAGATATCCTGTACTTCAGTGGGAGCTGTTCTTGCTCAGTTTGAAACTGAGGAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046324-'2-6,'2-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.7=45.8)
Main Skipping Isoform:
ENSBTAT00000063840fB232
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTTGCAACGACTGAGA
R:
TGACTCAATGTCCAATTCTCTGAGT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]