BtaEX6028517 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93664519-93667122:-
Coord C1 exon
chr4:93667029-93667122
Coord A exon
chr4:93664858-93665031
Coord C2 exon
chr4:93664519-93664601
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCACCTTGGACACAGGCT
3' ss Score
5.9
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
GCTGGCCAGGTCAGCTGTGTGCGGCAGCGCTGCCCACCCCTGTCCTGCCCGCTCCAGGTCACGGAGCCGGGGAGCTGCTGTCCTCGCTGCAGAG
Seq A exon
GCTGCCTGTTTCATGGGGAGGAGCACCCCGAAGGCAGTAGCTGGAAGCCCCCTGACAGCCCCTGCTCCTCCTGCATGTGTCATGAGGGTGTCATCACCTGTGCCCGCATCCAGTGTGTCACCTCCTGTGCCCAGCCCCACCAGGGGCCCAGTGACTGCTGCCCTCGGTGCTCTG
Seq C2 exon
ACTGTGAGCATGAGGGTCGGAAGTATGAGCCAGGAGAGAGCTTCCAGCCCGGTGCAGACCCCTGCGAAGTCTGCGTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'37-47,'37-46,42-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=WD(100=94.9)
C2:
PF0009313=VWC=PU(39.4=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGGTCAGCTGTGT
R:
CTCACAGACGCAGACTTCGC
Band lengths:
175-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]