Special

BtaEX6029075 @ bosTau6

Exon Skipping

Gene
Description
C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr4:106066502-106069315:-
Coord C1 exon
chr4:106069256-106069315
Coord A exon
chr4:106066952-106067011
Coord C2 exon
chr4:106066502-106066638
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGGTTTTCTTTTCATTTCAGTCC
3' ss Score
7.55
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCCCACAGATTTTTGGTGAAAATAATGCCATCTTCATTCCCACAGAGAGCTCTGCAACAG
Seq A exon
TCCCACAGATTTTGGGGAATGGCACTGTCAGCTTCACTCCAACAGAGAGCTACGGAACAG
Seq C2 exon
TCTGCCCCAAGGGGTGGGATTTTCATCAGGGAAGATGTTTTTTCTTGTCCAAATCGGAATCGTCTTGGAACAAGAGCATGAACTTTTGCAAGGAAAAAGGATCCACGTTGGCCATTGTCAACACGCCAGAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020453-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(27.6=58.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTTCATTCCCACAGAGA
R:
TGGCCAACGTGGATCCTTTTT
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]