BtaEX6030018 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14187543-14191805:+
Coord C1 exon
chr6:14187543-14187616
Coord A exon
chr6:14189834-14189884
Coord C2 exon
chr6:14191719-14191805
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTAATATTCTATTCCTAAGATG
3' ss Score
3.55
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTGGGAAACCATTGACTACAATAGTTTCACAAGCTATACCAAAGTCTCCTCATCTGAACCAGGATCCTCATCAG
Seq A exon
ATGATAAAAGAAAATGAAGCTGAACCAAGTGAATCACGTCAGTCTTTGCAG
Seq C2 exon
TTCATTCCCTTGGGCACTGAAGAAGAGACTGCTTTTCTAGCTGTTATTCCTAAACAAATGGAGAGAGAAACCTGTAATGACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.621
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCTATACCAAAGTCTCCTCA
R:
TGGGGTCATTACAGGTTTCTCTCT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]