BtaEX6035383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84910166-84937203:-
Coord C1 exon
chr8:84937165-84937203
Coord A exon
chr8:84934911-84934961
Coord C2 exon
chr8:84910166-84910292
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCTGTCCTCTCAGCTG
3' ss Score
10.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGGGTTCTGCTCGGAAAGTGAAGGGTGCGCACCTGGG
Seq A exon
CTGAACCACAATTCTCTACTCTCCCAAAAGCAGAAAATGAACATAATTCAG
Seq C2 exon
GCATCAGTGTCATTCAAGGATGTGACTGTGGAATTCACCCAGGAAGAGTGGCATCAGATGGACTCTGCTCAGAGGACCTTGTACAGAGATGTAATGCTGGAGAACTACAGCCACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836-'1-5,'1-2,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGGAAAGTGAAGGGTG
R:
AGGTGGCTGTAGTTCTCCAGC
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]