BtaEX6037213 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8550500-8553156:+
Coord C1 exon
chr7:8550500-8550534
Coord A exon
chr7:8550885-8551113
Coord C2 exon
chr7:8553012-8553156
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTCCTTCATCCTCAGGAT
3' ss Score
11.33
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAATTTGTGTGAGACAAGCCGCTCTTGACAGAAG
Seq A exon
GATTCAGCCTCCACTCTGACTGCCCCACAGGATGCTGGAGCTGAGCCTGTCCTGGCTGGGACTCGGGCCAGTGGCAGCCTCCCCGTGGCTGCTGCTGCTGTTCACTGGGGCCTCCTGGCTCCTGGCCCGCATTCTGGCCTGGACCTACACCTTCTACAACAACTCTCGTCGCCTCCAGTGTTTCCCACAGCCCCCAAAACGCAACTGGTTCTTGGGTCACCTAGGCCTG
Seq C2 exon
GTCCCCCCCACGGAGCAGGGCATGAGCAAATTAACTGAGCTGGTGGCCAAATACTCCCAAGGATTTAGGATCTGGATGGGTCCCATCACCCCCATCATCGTTTTCTGCCACCCTGACTTGATCCGGATCGTCGCCAATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGTGTGAGACAAGCCGC
R:
CATTGGCGACGATCCGGATC
Band lengths:
172-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]