BtaEX6038097 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKG0]
Coordinates
chr7:16610680-16611925:-
Coord C1 exon
chr7:16611845-16611925
Coord A exon
chr7:16611469-16611576
Coord C2 exon
chr7:16610680-16610789
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGGCTGCTTCTCCCCCATAGATG
3' ss Score
9.33
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
CAAAAAGCCCAAGACCTCCGGGGAGCTGACAAGTGGGTGAAGAAGCTGAGGAGCTGGCAAAAATACCAGGGCAGCACGAAG
Seq A exon
ATGTGCCGAAGGGTATCCATGGGCATCCCTCCACCAGTGCGAGGGCAGGCCTGGTCTCTGCTCTGGGACCTGGAGAAGGTGAAGGCGGAGAACATCAGGAAATATCAG
Seq C2 exon
AGCATAAAAGAGCAGGCCCGGCGGTGCTGTCCTGACGTCAAGCACATTGACGTAGACATCAACCGCGCCTTCAGGAATAACCTCTTCTTCTGGGAGCGAAACGGAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032364-'4-5,'4-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(12.2=69.4)
C2:
PF0056613=RabGAP-TBC=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGCCCAAGACCTCCGG
R:
TTGATTCCGTTTCGCTCCCAG
Band lengths:
191-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]