BtaEX6038480 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18048983-18051917:-
Coord C1 exon
chr7:18051789-18051917
Coord A exon
chr7:18050604-18050729
Coord C2 exon
chr7:18048983-18049108
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCACATGCCCAGATG
3' ss Score
6.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACATCGACGAGTGCCGCATCTCCCCTGACCTCTGTGGCCAGGGCACCTGTGTCAACACCCCGGGCAGCTTTGAGTGCGAGTGTCTCCGTGGCTACGAGAGTGGCTTCATGCTGATGAAGAACTGCATGG
Seq A exon
ATGTGGATGAGTGTGCCCGGGACCCGCTGCTGTGCCGGGGAGGCACCTGTACCAACACAGATGGGAGTTATGAGTGCCAGTGTCCCCCTGGACATGCGCTGGCAGCTGAGGGCACTGCCTGCGAAG
Seq C2 exon
ACGTGGACGAGTGTTCCCTGAGTGACGGCCTGTGTCCGCACGGCCAGTGTGTCAACGTCATCGGTGCCTTCCAGTGCTCCTGCTATGCCGGCTTCCAGAGCACACCTGACCGCCAAGGCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGACGAGTGCCGCATC
R:
CCTTGGCGGTCAGGTGTG
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]