BtaEX6039503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26892021-26893929:+
Coord C1 exon
chr7:26892021-26892146
Coord A exon
chr7:26892800-26892952
Coord C2 exon
chr7:26893864-26893929
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGCTTTCTTGATTAGATA
3' ss Score
7.69
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATAAATGAGTGTGATGAAGATCCCAACATCTGTCTTTTTGGTTCCTGCACCAATACTCCTGGGGGCTTCCAGTGCATCTGTCCCCCTGGGTTTGTATTGTCTGATAATGGACGGAGGTGCTTCG
Seq A exon
ATACTCGCCAGAGCTTCTGTTTCACAAACTTTGAAAATGGAAAGTGTTCTGTACCCAAGGCTTTCAACACCACAAAGGCAAAATGCTGCTGCAGTAAGATGCCAGGAGAGGGCTGGGGGGACCCCTGTGAGCTGTGTCCCAAAGATGATGAAG
Seq C2 exon
TGGCATTCCAGGATTTGTGTCCCTATGGCCACGGAACTGTTCCTAGTCTTCATGATACCCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'86-87,'86-86,87-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTGATGAAGATCCCAACA
R:
CTTCACGGGTATCATGAAGACT
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]