BtaEX6039526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26855738-26858970:+
Coord C1 exon
chr7:26855738-26855866
Coord A exon
chr7:26856635-26856760
Coord C2 exon
chr7:26858845-26858970
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCACGTTTTTACCTTTCAGACA
3' ss Score
9.36
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACATTGACGAGTGCAGGATTTCTCCTGACCTCTGTGGGAGCGGCATCTGTGTCAACACGCCGGGCAGCTTTGAGTGCGAGTGCTTCGAAGGCTACGAGAGCGGGTTCATGATGATGAAGAACTGCATGG
Seq A exon
ACATTGACGAATGTGAACGTAACCCTCTCCTTTGTAGGGGTGGCACCTGTGTGAACACTGAGGGCAGCTTTCAGTGTGACTGCCCACTGGGACACGAGCTGTCACCATCACGTGAGGACTGTGTGG
Seq C2 exon
ATATTAATGAATGCTCTCTGAGTGACAATTTATGTAGAAATGGGAAATGCGTAAACATGATTGGAACTTATCAGTGCTCCTGCAATCCTGGGTACCAGGCCACGCCAGATCGGCAGGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'63-63,'63-61,64-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGTGCAGGATTTCTCC
R:
CTGTACAGCCCTGCCGATCT
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]