BtaEX6039566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26767143-26814304:+
Coord C1 exon
chr7:26767143-26767268
Coord A exon
chr7:26798465-26798590
Coord C2 exon
chr7:26814146-26814304
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTTTCCCTGATTAGACA
3' ss Score
7.72
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
ATGTTGATGAATGCCAGGCTATTCCTGGGATATGCCAGGGAGGAAACTGTATCAATACAGTGGGCTCTTTTGAATGCAAATGTCCTGCAGGTCACAAGCAGAGCGAAACTACTCAGAAATGTGAAG
Seq A exon
ACATTGACGAGTGCAGCATCATTCCTGGGATATGTGAAACTGGCGAATGTTCCAACACCGTGGGAAGCTATTTTTGTGTTTGTCCACGTGGATATGTAACCTCAACAGATGGCTCTCGGTGCATCG
Seq C2 exon
GTTTAGATCAGAGAACAGGCACGTGTTTCTCGGGCCTGGTGAACGGTCGCTGTGCACAAGAGCTTCCGGGCAGGATGACCAGAATGCAGTGCTGCTGTGAGCCCGGCCGCTGCTGGGGCATCGGAACCATTCCTGAAGCCTGTCCTGTCAGAGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'6-7,'6-6,9-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0068312=TB=PU(86.4=70.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATATGCCAGGGAGGAA
R:
TGACAGGACAGGCTTCAGGAA
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]