BtaEX6046748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100698807-100700272:+
Coord C1 exon
chr11:100698807-100699088
Coord A exon
chr11:100699766-100699874
Coord C2 exon
chr11:100700098-100700272
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCGGTGGCTCTTGTCTGCAGTTG
3' ss Score
6.69
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
TCCCACCCACCATCGAGGGCACTGGCGAAGGACCTCGAGTGGTGAAAGCCGTGGCCGGGAGGCCCTTGACCCTCGAGTGTGTGGCCAGAGGCTACCCACCCCCCACTGTCTCCTGGTACCACGAGGGGCTGCCCGTGGTGGACCGCAACGGGACGTGGCTGGGGGCGGGCGGTGGCGTGCTGAGCCTGGAGAGCCTGGGGGAGGCGTCCGGAGGCCTGTACAGCTGCGTGGCCAGCAGCCCCGCGGGGGAGGCCGTGCTGCATTACTCCGTGGAGGTGCAGG
Seq A exon
TTGCCCCGCAGCTCCTGGTGGCTGAAGGCTTGGGCCAGGTGACCACCCTCGTGGGACAGTCCCTGTACCTTCCCTGCTATGCTTCGGGCTCCCCGGTGCCCACGATCCA
Seq C2 exon
GTGGCTGCAGAATGGCCACCCGGCCGAGGAGCTGCCTGGGGTCCACGTGACCTCGGAGGGGACCACTCTGCACATCGACCACGTGGAGCTGGGCCATGCGGGTCTCTTTGCTTGCCAGGCCACCAACGAGGCTGGCACGGCCGCAGCCGAGGTGGAGCTGTCTGTGCACGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.203
Domain overlap (PFAM):
C1:
PF139271=Ig_3=PD(95.2=83.2)
A:
PF0767911=I-set=PU(34.9=81.1)
C2:
PF0767911=I-set=PD(64.0=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTCCTGGTACCACGAG
R:
GTCGATGTGCAGAGTGGTCC
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]