BtaEX6047298 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104345633-104349457:+
Coord C1 exon
chr11:104345633-104345734
Coord A exon
chr11:104348652-104348722
Coord C2 exon
chr11:104349342-104349457
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCTGGCATCTTTCTCCCCAGTGG
3' ss Score
9.05
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCTCCTCTCTGTTCCTCTGCCTGGTGATGGAGTACCACAAGGAAAGCTTCCAGAATGTCATTGAGAAGAACAGGGCGGCAAAAACAGCCATAGACTCCGAG
Seq A exon
TGGCTGCAGAACATGCTAGGCCAGGTGCTGGACGCGCTGGATTACCTGCACCACTTGGACGTCATCCACAG
Seq C2 exon
GAACCTCAAGCCCTCCAACATCGCCCTCGTCAGCAACGCCCACTGCAAACTGCAGGACCTGAGCTCCAACACGCTCATGACCGACAAGGCCAAGTGGAACGTCCGGGCAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'4-5,'4-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(8.6=100)
C2:
PF0006920=Pkinase=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCTCTGTTCCTCTGCC
R:
GAGCTCAGGTCCTGCAGTTTG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]