BtaEX6047314 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104395016-104396276:+
Coord C1 exon
chr11:104395016-104395145
Coord A exon
chr11:104395652-104395834
Coord C2 exon
chr11:104396231-104396276
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTTCCTCTCCTCAGCTG
3' ss Score
10.49
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGCGCCAGGTGACCTACAGGTGTCGGGACCAGTCCAGGAGCGAGTGGGTGGAGGCTGCCCACTGTGCAGGGAGCCAGCCCCCCGTGGCATGGTCAGAGACCTGCACCCCTGGGCCCTGCCCCCCGCA
Seq A exon
CTGGGAGGCTGGAGACTTCGGCCCCTGCAGCGCCTCGTGTGGGGGTGGCCTGCGGGAGCGAGAGGTGCGCTGCGTGGAGGCCCGGGGCGGCCTGCTGAGGACTGTTCCCCGCTCCCGGTGCAGAGCGCTGGCCCCGCAGCCGGCGGCCGTGGACACCTGCAATTCCCAGCCCTGCCCCCAGAG
Seq C2 exon
GTGGTCCGCGGGTGGCCCTGGGCACCCTCCCTGTCCCCCGCATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'21-27,'21-26,22-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCCAGGTGACCTACAG
R:
CATGCGGGGGACAGGGAG
Band lengths:
172-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]