BtaEX6054416 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75404740-75561432:-
Coord C1 exon
chr10:75561040-75561432
Coord A exon
chr10:75536618-75537044
Coord C2 exon
chr10:75404740-75404939
Length
427 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCTTTTTTTCAGGGA
3' ss Score
12.31
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTCTTCAGCTGGGATCAGATATCCTTCCTCAGTATAAGCAAGAAGCGCCAAAGACGCCACCACACATTATTTTACACTATTGTGCTTTTAAAACAACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATTATGGTTCCTTACAACGTCTCCTTCAAAACGAAGCAGAACAACATAGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTTATTTTTCTGGTTGACATTGTTTTAAATTTTCACACAACCTTTGTGGGACCTGGTGGAGAGGTTATTTCTGACCCCAAGTTGATAAGGATGAACTATCTGAAAACTTGGTTTGTGATCGATCTGTTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
Seq A exon
GGAATCAGCAGTCTCTTCAGTTCTTTAAAAGTGGTGCGTCTCTTGAGACTGGGCCGTGTTGCCAGGAAATTGGACCATTACCTGGAGTATGGAGCAGCTGTCCTTGTGCTCCTGGTTTGTGTGTTTGGACTAGTTGCTCACTGGCTGGCCTGCATATGGTACAGCATTGGGGACTACGAGGTCATCGATGAAGTCACGAACACCATCCAAATAGACAGTTGGCTCTACCAGCTGGCCTTGAGCATTGGGACTCCGTATCGATACAATACCAGTGCAGGGATATGGGAAGGAGGACCCAGCAAGGATTCCCTGTATGTGTCCTCTCTCTACTTTACCATGACAAGCCTTACAACCATAGGATTTGGAAACATAGCTCCTACCACAGACGTGGAGAAGATGTTTTCAGTGGCCATGATGATGGTTGGCT
Seq C2 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGATACCATGAGATGCTGAATAATGTACGGGACTTTCTGAAACTCTATCAGGTCCCCAAAGGCCTTAGTGAACGAGTCATGGATTATATTGTCTCAACATGGTCCATGTCAAAAGGCATCGACACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'7-14,'7-7,8-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
A:
PF0052026=Ion_trans=FE(64.8=100)
C2:
PF0052026=Ion_trans=PD(4.6=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACATAGCCTGGCTGGTG
R:
CGTTCACTAAGGCCTTTGGGG
Band lengths:
358-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]