BtaEX6058792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32650972-32656980:+
Coord C1 exon
chr15:32650972-32651089
Coord A exon
chr15:32651300-32651373
Coord C2 exon
chr15:32656892-32656980
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTCTTGCATTTTAGGTT
3' ss Score
11.9
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
CTCTCCCAGGGCTGCTCCCTCCACCTGGCCCAGCGGCTCAGCCAGCTGCTGAGCCTCCAGCTTCGGCGGATGCCCATCCTATCCAAGGAGTCAGCGCCCGGGCTCATCATCGCCACCG
Seq A exon
GTTCGGTGGGGAAGAACCTGGCAAGCAAGACGAACGTATATATCTCCAGCAGTGCTGGAGCCCGGTGGCGAGAG
Seq C2 exon
GCTCTGCCCGGACCTCACTACTACACGTGGGGGGACCATGGCGGCATCATCATGGCCATTGCCCAGGGCATGGAAACCAACGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'36-17,'36-15,37-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCAGGGCTGCTCC
R:
CATGATGATGCCGCCATGGTC
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]