BtaEX6061729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015374 | COL22A1
Description
collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22989]
Coordinates
chr14:5244415-5251328:+
Coord C1 exon
chr14:5244415-5244468
Coord A exon
chr14:5250592-5250645
Coord C2 exon
chr14:5251275-5251328
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCCCCCTCTTTCTTTTCAGGGC
3' ss Score
13.29
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GGAAAGAGAGGTGAGGCGGGTCCTCCTGGAGTCCCTGGCTTGCTGGGGCAGCAG
Seq A exon
GGCCCCCCAGGACCACCTGGCGTCCCAGGCCCCCCTGGACCCGGAGGCCCCCCG
Seq C2 exon
GGTCTGCCTGGAGAGATCGGCTTCCCGGGAAAGCCTGGGCCCCCTGGGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015374-'30-32,'30-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.7=100)
A:
PF0139113=Collagen=FE(20.7=100)
C2:
PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=PU(10.4=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAGAGGTGAGGCGGG
R:
CAGGGGGCCCAGGCTTTC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]