BtaEX6063055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046358 | PABPC1
Description
Bos taurus poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174568]
Coordinates
chr14:65826315-65829433:+
Coord C1 exon
chr14:65826315-65826410
Coord A exon
chr14:65828660-65828932
Coord C2 exon
chr14:65829343-65829433
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTTCTTTCAATAGGTT
3' ss Score
10.69
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTGTTAACCTTTATGTGAAAAATCTTGACGATGGTATTGATGATGAACGTCTCCGGAAGGAGTTTTCTCCATTTGGCACAATCACCAGTGCAAAG
Seq A exon
GTTATGATGGAGGGTGGTCGCAGCAAAGGTTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACGGAAATGAACGGTAGAATTGTGGCCACCAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTTACTAACCAGTATATGCAGAGGATGGCAAGTGTAAGAGCTGTGCCCAACCCCGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAG
Seq C2 exon
ACTCAGAACCGTGCTGCATACTATCCTCCTAGTCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046358-'19-14,'19-10,23-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.742
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(40.6=87.5)
A:
PF0007617=RRM_1=PD(56.5=42.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTATGTGAAAAATCTTGACGA
R:
TCTGGCACCCTGAGCAGTC
Band lengths:
173-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]