BtaEX6068376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38073570-38075612:-
Coord C1 exon
chr16:38075427-38075612
Coord A exon
chr16:38074509-38074694
Coord C2 exon
chr16:38073570-38073643
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGTGGTTGTTTTTAGCTG
3' ss Score
9.07
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCAGAGAGTGCGGCGAGTTTGATCTTCCTCAACATGTGCACATGAACTGCAGCCACCCTCTTGGAAACTTCTCTTTCAACTCACACTGCAGCTTCCACTGTGCTGAAGGCTATGCGCTGAACGGACCCAGTGAGCTGGAGTGTTTGGCTTCTGGAATCTGGACGAATTCACCCCCACAGTGTGTAG
Seq A exon
CTGTCCAGTGCCCGGCTCTGAAGTCTCCGGAGCAAGGAAGCATGAGCTGTGTCCAGTCCGCGGAAGCATTCCAGCACCAGTCCAGCTGCAGCTTCAGCTGCGAAGAGGGATTCGAATTAGTTGGGCCAGAGGTAGTGCACTGCACAGCCTTGGGGGTGTGGACAGCCCCAACTCCGGTGTGTAAAG
Seq C2 exon
CTATGCAGTGTGAGTTCCTGGAAGCCCCTACCAAGGGAATCCTGGACTGTGTCCATCCCCTTGTTTCCCTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755-'6-5,'6-4,7-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.8=95.2)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCGGCGAGTTTGATCTTC
R:
AGGGAAACAAGGGGATGGACA
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]