BtaEX6069828 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B750]
Coordinates
chr16:55719009-55721536:-
Coord C1 exon
chr16:55721244-55721536
Coord A exon
chr16:55720201-55720758
Coord C2 exon
chr16:55719009-55719198
Length
558 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTGTTTCCCCACAGGAG
3' ss Score
12.09
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCAGAATGAGTCTTTGGGCCCCACCCAGACTCCTGGACCTGGCAGCTATGAGCGTGCTAAGGAATGAGGATTTGGCCATGAGTTCTTTGGAGTTTCTGCCCATTGAGCTTTTCCCCCTACTCTTCATGGAAGCCTTCTATGGGAGTCACATTAAGACCCTGAAGACCATGGTGTATTCCTGGCCTTTCGTCCGCCTGCCTCTGGGGGGCCTGATGGAGCCGCCTCATCTGATAACCTTACAAGCAGTACTGGATGGACTTGATGTCCTGCTTTCCCAGAAGGAGCACCCCAG
Seq A exon
GAGGTGCAAACTGCAGGTGTTGGATTTAAGGAATACTGGCCAGAACTTCTGGAGCATATGGTCTGGATACATGGACCACATGTACTCAAGCTCACTGACGGCACCAGTTCCTGAGGACAGGTCAAGGACAAAGCAGCCCTTGGCTCCCTTGGAGGTGTTCATAGAGATGAACCTCAAGGAATGGGCCATGGATGAGTTCCTCACCTACCTCATGAGGTGGGCAGAACAAAGAAAAGGTTCCATACACCTGTGCTGTAAGAAGCTGAAGATCTTTGGAATGCCTGTGGAAAATATTATGAAGGTCCTGAGTATGGTGCAGCTGGACTGTATCCAGGATGTAGAAGTCAACCAGAACTGGCATCTGTCCAGCCTGGCCACATTCGCTCCTCTCCTGGGCCAAATGAGTAACGTGCAGAGACTCATACTTTCTGCCTCTAAAGAGCAGGAACAGCATGTTGTTGTCCAGTTTACCTCTCAGTTCCTCAAGCTGCACCACCTCCGGGATCTCTATCTGGAATCTCCCTTCTTCCTGTCAGGCCGCCTGGACCAGATGCTCAG
Seq C2 exon
GTGTCTGATGAGCCCCTTGGATAACCTCACGATAACTCACTGCCTCCTTACAGAATCAGACTTGACCCACCTGTCCCAGTGCCCAAGAATCAGTCAGCTAAAAGGCCTGGATCTGAGTGGTATCACCCTGGCTGACTTTAGTCCTGAGCTCCTTCAAGTTCTGCTGGAGCAAGTTGCAGATACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024791-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTCTGCCCATTGAGC
R:
AAGTCAGCCAGGGTGATACCA
Band lengths:
343-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]