BtaEX6070846 @ bosTau6
Exon Skipping
Description
Membrane cofactor protein [Source:UniProtKB/TrEMBL;Acc:F1MLR1]
Coordinates
chr16:77741890-77747824:-
Coord C1 exon
chr16:77747777-77747824
Coord A exon
chr16:77742631-77742684
Coord C2 exon
chr16:77741890-77741925
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCCAATTTTTTCCCCTAGGAT
3' ss Score
12.58
5' ss Seq
TAGGTATTA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GTTACAAGCCAACTCATCCAACGAAGACTCCACTTTCAAAATATCCAG
Seq A exon
GATACCCCAATCCCAGTGACGAAATACCATCACTTGAAGACTTTGAGGATTTAG
Seq C2 exon
ATGCAGGAATCATTGCTCTGGCTATTCTTACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030910-'7-9,'7-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.368 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152811=Herpes_glycop=PU(1.1=5.3),PF0293211=Neur_chan_memb=PU(1.0=5.3),PF084965=Peptidase_S49_N=PU(1.0=5.3)
C2:
PF0152811=Herpes_glycop=FE(12.6=100),PF0293211=Neur_chan_memb=FE(12.1=100),PF084965=Peptidase_S49_N=FE(12.1=100),PF041569=IncA=PU(11.3=84.6),PF0334810=Serinc=PU(10.5=76.9),PF074236=DUF1510=PU(9.5=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAAGCCAACTCATCCAACG
R:
TTGCAGTAAGAATAGCCAGAGCA
Band lengths:
84-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]