BtaEX6070871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038171 | CFHR5
Description
complement factor H-related 5 [Source:HGNC Symbol;Acc:HGNC:24668]
Coordinates
chr16:77885216-77888405:+
Coord C1 exon
chr16:77885216-77885410
Coord A exon
chr16:77886263-77886439
Coord C2 exon
chr16:77888223-77888405
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAACAACTTTTGGTCCTTAGGAG
3' ss Score
6.15
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAGACATTGTGATTTTCCAAAAATAAACCATGGAATTCTGTACAATGAAAAGAAATACAAGGCATCTTTCCCAGTTTCTCTTGGGAAAATTTTCTATTATTCCTGTGAATATAATTATATGCCTCCTTCAAAATACTTTTGGACTCCCATAACATGCACAGAGGGCGGATGGTCACCGACTCCAAAGTGTCTCA
Seq A exon
GAGTGTGTTTCTTTCCTTTTGTGGAAAACGGTCAATCTGCATCTTCGGGACAAATATACCTGGAAGGCGCCACTGTGCAAATTACCTGCAATAAGGGCTACAGTCTCCCGGATAACCAGGGCAGCATTACCTGTGCTGAAGGGGGCTGGTCCTCCCCTCCGGAATGCATCTCCACCA
Seq C2 exon
AAAAATGTTTAAAAACAGATATTGTAGTTGCCAATGGGTTTTTGTCTGAGTCAGAATATGCTTATTCTGTGAATAAAGAAACACAATATAAGTGTAAACCAGGATATACAACAGCAGATGGAAAAACGTCAGGGACAGTTCAGTGTTTGCAAGGTGGATGGTCAAGTCAACCCACTTGTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038171-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.4)
A:
PF0008415=Sushi=WD(100=86.7)
C2:
PF0008415=Sushi=WD(100=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGTTTCTCTTGGGA
R:
ACGTTTTTCCATCTGCTGTTGT
Band lengths:
258-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]