BtaEX6072964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63399195-63400393:-
Coord C1 exon
chr17:63400256-63400393
Coord A exon
chr17:63400035-63400170
Coord C2 exon
chr17:63399195-63399315
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCCATCTCCCCGCAGAAC
3' ss Score
12.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCGCTCGTCCATCCCCGTGTCGCACATCCGAGCCGTGGAGCGCGTGGACGAGGGCGCCTTCCAGCTGCCGCACGTGATGCAGGTGGTGACGCAGGACGGCGCGGGGGCGCCGCACACCACCTACCTCCAGTGCAAG
Seq A exon
AACGTGAACGAGCTCAACCAATGGCTGTCGGCCCTGCGCAAGGCCAGCGCCCCCAACCCGGACAAGCTGGCCTCCTGCCACCCCGGTGCCTTCCGCAGCGGGCACTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
Seq C2 exon
CTTCCGGTTGCAGCCGCACGCACTCGGCCGTCACCCTGGGGGACTGGAGTGACCCGCTGGATCCCGATGCTGAGACCCAGATGGTGTATCGGCAGCTGCTTCTGGGGCGGGACCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739-'22-27,'22-25,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.043 C2=0.134
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.1=100)
A:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCCATCCCCGTGTCG
R:
GTCCCGCCCCAGAAGCAG
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]