BtaEX6074012 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MZ28]
Coordinates
chr17:73035792-73036903:-
Coord C1 exon
chr17:73036659-73036903
Coord A exon
chr17:73036240-73036375
Coord C2 exon
chr17:73035792-73036204
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCGCGGCCCGGCAGGCG
3' ss Score
7.35
5' ss Seq
AGGGTAGAG
5' ss Score
0.88
Exon sequences
Seq C1 exon
TTGCTGCAGAATGAGGCCTTGGCCATTGCGGCCCTGAAGGAGCTGCCCGTCAAGCTCTTCCCGAGGCTGTTTACGGCGGCCTTTGCCAGGAGGCACACCCATGCCGTGAAGGCGATGGTGCAGGCCTGGCCCTTCCCCTACCTCCCGATGGGGGCCCTGATGAAGGACTACCAGCCTCATCTGGAGACCTTCCAGGCTGTACTTGATGGCCTGGACCTCCTGCTTGCTGAGGAGGTCCGCCCTAG
Seq A exon
GCGGTGGAAGCTGCAGGTGCTGGACTTGCGCCGGAACGCCCACCAGGACTTCTGGACCTTGTGGTCCGGCATCAAGGCCAGCGTGTGCTCACTGCTGGAGCCCGAGTCAGCCCAGCCCATGCAGAAGAGGAGCAGG
Seq C2 exon
CGGGGCCCTTTGGAGGTGCTGGTCGACCTGTGCCTCAAGGAGGACACGCTGGACGAGACCCTCTGCTACCTGCTGAAGAAGGCCAAGCAGAGGAGGAGCCTGCTGCACCTGCGCTGCCAGAAGCTGAGGATCTTCGCCATGCCCATGCAGAGCATCAGGAGGATCCTGAGGCTGGTGCAGCTGGACTCCATCCAGGACCTGGAGGTGAACTGCACCTGGAAGCTGGCTGGGCCGGATGGGCAACCTGCGCGGCTGCTGCTGTCGTGCATGCGCCTGTTGCCGCGCACCGCCCCCGACCGGGAGGAGCACTGCGTTGGCCAGCTCACCGCCCAGTTCCTGAGCCTGCCCCACCTGCAGGAGCTCTACCTGGACTCCATCTCTTTCCTCAAGGGCCCGCTGCACCAGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033890-'0-2,'0-1,1-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTACCTCCCGATGG
R:
CGAAGATCCTCAGCTTCTGGC
Band lengths:
250-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]