BtaEX6074323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74563042-74570229:-
Coord C1 exon
chr17:74570184-74570229
Coord A exon
chr17:74568339-74568409
Coord C2 exon
chr17:74563042-74563168
Length
71 bp
Sequences
Splice sites
3' ss Seq
GACTCATTCGTCCTTTCCAGATC
3' ss Score
10.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGTGAGCTGCTCCCGGAGCCTCAGGTCACGGCCGCTCCCCAGGAAG
Seq A exon
ATCCTGCTCGTCCCCTCAAAGAGATTGCAGAAGATACATTGCCTCGGGGTCTCCTGGAAGCCAGGTCTGAG
Seq C2 exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257-'0-5,'0-0,4-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=0.732 C2=0.326
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGCTGCTCCCGGAG
R:
CCAGGGAGAGAAGGTTCTGGT
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]