BtaEX6081958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47513679-47523823:+
Coord C1 exon
chr18:47513679-47513805
Coord A exon
chr18:47514113-47514208
Coord C2 exon
chr18:47523204-47523823
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATATCTTTTCTTGTGAGCAGGAC
3' ss Score
6.82
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGATCAGTGGTGTTCAGTGATGTGTCTATAGACTTCTCTCAAGAGGAGTGGGAATTCCTGAACCCTGCTCAGAGGGACTTGTACAGAGATGTGATGTTGGAAAACTATAGCAATCTGGTGTCAATGG
Seq A exon
GACTTTACATTCCCAAGCCTCAAGTTATTTCCTTATTGGAACAAGGGAAAGAGCCATGGATGATTGGCAGAGAGCTGACAAGAGGCCTGTGCTCAG
Seq C2 exon
CTCTGGAATCAATGTGTGAAACCAAGTTATTATCGCTAAAGAAGGAAGTTTACGAAATAGAATCATGCCAGAGGGAAATGATGGGACTTAGAAAACATGGCTTTGAATACTCCAGTTTCAGAGATGTTTTGGAATATAGAAGTCACTTTGAAAAACAACTGGGATATCAAAATGGGCATTTCAGCCAAGAAATACTCACTCATGAGTACATGCCCACATTTGTTCAACAGACATTCTTTACTTTACATCAAATTAACAATGAAGAGAAACCGTATGAATGTAAGAAATGTGGAAAGGTCTTTAGTCAGAATTCACAATTTCTTCAACATCAGAGAATTCATATTGGCGAAAAATCTTATGAATGTAAAGAGTGTGGGAAATTCTTTAGCTGTGGCTCACATGTTACTCGACATCTGAAAATTCATACAGGTGAAAAACCCTTTGAATGTAAAGAATGTGGAAAGGCCTTCAGCTGTAGCTCATACCTTTCTCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.6),PF134651=zf-H2C2_2=WD(100=12.6),PF134651=zf-H2C2_2=PU(65.4=8.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAATTCCTGAACCCTGC
R:
GTCCCATCATTTCCCTCTGGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]