BtaEX6082501 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50447649-50450227:-
Coord C1 exon
chr18:50450078-50450227
Coord A exon
chr18:50448077-50448237
Coord C2 exon
chr18:50447649-50447825
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCAACTTCCATTATTCAGGGG
3' ss Score
5.51
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTGTAGCACTGGCTAATGGAGAACGATGGAGGATTCTCCGACGCTTCTCCCTGACCATTCTTCGGGACTTCGGGATGGGAAAGAGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTTCCTACTAGTGGAATTACGCAAGACCAGGG
Seq A exon
GGGCTCGCATCGAACCTACTTTCTTCCTGAGCCGCACTGTCTCCAACGTCATCAGTTCCGTCGTCTTTGGAAGCCGCTTTGACTATGAGGACCAGCAGTTCCTGAAGTTGCTGCAAATGATCAACCAGAGTTTCATAGAAATGAGCACATCCTGGGCCCAG
Seq C2 exon
TTATATGACATGTATTCTGGAATCATGCAATATTTGCCAGGAAGACACAATCGCATCTACTACTTGATAGAGGAGCTCAAGGACTTCATTGCCTCCAAGGTCAAGATCAACGAAGCATCGCTTGACCCCCAGAACCCTCGGGACTTCATTGATTGCTTCCTCATCAAGATGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGACCATTCTTCGGGA
R:
ATGAAGTCCCGAGGGTTCTGG
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]