BtaEX6082798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52472259-52480894:+
Coord C1 exon
chr18:52472259-52472342
Coord A exon
chr18:52477750-52477795
Coord C2 exon
chr18:52480768-52480894
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTCTGTCTTCCTAGGAC
3' ss Score
12.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TCAAACTTCCCCGAAATGCGCTTGGGGCCAGCATCTCCTGACCTTTCATTTGGAGAGAAAGAGAAGCAGCGGCTAGAAGCAGAG
Seq A exon
GACTCTGCACTTCCCTGGAAGGAGAGAGAAGATGAACATGTTCATG
Seq C2 exon
GAGGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACAGAGGAGGAGCTGGGGTTACTGGACTCAGCCCAGAGAAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431-'7-2,'7-1,22-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCATCTCCTGACCTTTC
R:
TGGTACAGCTTTCTCTGGGCT
Band lengths:
144-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]