BtaEX6087193 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30145076-30146868:-
Coord C1 exon
chr19:30146778-30146868
Coord A exon
chr19:30146302-30146691
Coord C2 exon
chr19:30145076-30145202
Length
390 bp
Sequences
Splice sites
3' ss Seq
GAGCTTCTCCCCACCTCCAGGCC
3' ss Score
8.75
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATCAGCAATTTGCAAAGCAAGATTGAAGATGAACAAGCACTTGGCATTCAACTGCAGAAGAAGATCAAAGAGTTGCAG
Seq A exon
GCCCGCATCGAGGAGCTGGAGGAGGAGATCGAGGCCGAGCGGGCCTCCCGCGCCAAGGCAGAGAAGCAGCGCTCAGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTAGAAGAAGCCGGCGGGGCCACTTCCGCCCAGATTGAGATGAACAAGAAGCGGGAGGCCGAGTTCCAGAAGATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAGGCCACGGCGGCCGCTCTTCGCAAGAAGCACGCGGACAGTGTGGCTGAGCTGGGGGAGCAGATTGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGACGACCTTGCTAGCAATGTGGAAACGATCTCTAAAGCCAAG
Seq C2 exon
GGAAACCTAGAGAAGATGTGCCGAACTCTGGAGGACCAAGTGAACGAGCTGAAATCCAAGGAGGAGGAGCAGCAGCGGCTGATCAATGACCTGACAACCCAGAGGGGACGCTTGCAGACTGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090-'27-34,'27-33,28-34=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.892 C2=0.953
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0003816=Filament=FE(45.4=100),PF0157614=Myosin_tail_1=FE(15.0=100)
C2:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTTTGAAATCAGCAATTTGC
R:
AGATTCAGTCTGCAAGCGTCC
Band lengths:
215-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]