BtaEX6087352 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33621054-33622927:-
Coord C1 exon
chr19:33622883-33622927
Coord A exon
chr19:33621276-33621479
Coord C2 exon
chr19:33621054-33621181
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCGGTTTCCCTCTAGAAG
3' ss Score
10.4
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
CGAGCATGCACATGCTCACTGGTGAGGTGAGAAACAAGGATGAAA
Seq A exon
AAGTACAGTGGAAGAGTTCGCTCCAGTGTATTTCCGAGATGAACAGGCTATTTTCTGAAAAAGCCAGTGTGTCCAAATCAGGCTTGGCCCCGGCCACTGATGTGCTGTTGGAGCTGGACACTGTCAGAGAACTGTCCTCTGGGGTCAGCAGGTACCGCGACTTCATCCGCCAGCTGCCCATCCACCTCTCCAAGTATATTCTAA
Seq C2 exon
GTTTGCTGGATAGGAGCACCTTGAACAGGTGTAGCTTTGTGAGCCAGCACTGGGCGGCGCTGGCACAGCAGGTCAAGGCCGACCTGTCCATGCACTCCTTCATCCAGCACCAGATCACCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'12-13,'12-11,14-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064628=F-box=PU(33.3=21.7)
C2:
PF0064628=F-box=PD(64.4=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCACATGCTCACTGGTGA
R:
CAGGAAGGTGATCTGGTGCTG
Band lengths:
166-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]