BtaEX6098252 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27092129-27094013:-
Coord C1 exon
chr23:27093666-27094013
Coord A exon
chr23:27092770-27093057
Coord C2 exon
chr23:27092129-27092407
Length
288 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGCTCTGTTCCAGCCT
3' ss Score
9.34
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTGCAGAGGAAGAGACGCCCAGCCCCACAGAGATGGAGGAGACCCCCAGCCCCACAGAACCCAGCACAGAGGCCCCGGAGCCCCCCGAGGAGCCCCTCCTTGGCGAGCTGACGGTGACAGGATCCTCCCCGGACTCGCTGAGCCTCTCCTGGACTGTCCCCCAGGGCCACTTTGACTCCTTCACCGTCCAGTACAAGGGCAGGGACGGGCCCCAGGTGGTGCGTGTTGGGGGCGAGGAGACTGAGGTGACCGTTGGGGGCCTGGAGCCTGGACACAAGTACAAGATGCACCTGTACGGCCTGCACGGGGGGCGGCGCGTGGGCCCCGCGTCCACCGTGGGCGTGACCG
Seq A exon
CCTCCCTGACTACGGAGCGTCCCCTGGCACCCCGCCTAGGGGAGCTGGCGGTGGCAGTCGTGACCTCGGACACAGCGCGTCTCTCGTGGACGGTGGAGCAGGGGCCCTTTGACTCCTTCCTGGTCCAGTACAAGGATGTACAGGGGCAGCCCCAGGCAGTGCCCGTGGCTGGAGACCTCCGAGAGGTCACAGTTTCGAGTCTGGCCCCCGGCCGCAAGTACAAGTTCCTCCTGTTCGGACTCCGGGATGAGAAACGACACGGCCCAGTTTCTGCAGATGCAAAGACTC
Seq C2 exon
TCCCAGACACAAAACCTGCTCCCCGCCTGGGGGAGCTGACGGTGACAGATGTGACCCCGGACTCCGTGGGCCTCTCCTGGACAGTCCCCGAGGGTGAATTCGACTCCTTCGTGGTCCAGTACAAGGACAGGGACGGGCAGCCCCGCGTGGTGCCTGTGGCTGCCAACCAGCGCGAGGTCACCGTCCCCGGCCTGGAGCCCAATAGGAAATACAAGTTCCTGCTCTATGGGCTGGTAGGCAGGAAACGACTGGGCCCCATTTCCGCTGAAGGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444-'29-40,'29-39,30-40=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.216 C2=0.426
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=68.4)
A:
PF0004116=fn3=WD(100=81.4)
C2:
PF0004116=fn3=WD(100=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTCCTTCACCGTCCAGT
R:
TGTACTGGACCACGAAGGAGT
Band lengths:
300-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]