BtaEX6098267 @ bosTau6
Exon Skipping
Description
Bos taurus complement component 4A (C4A), mRNA. [Source:RefSeq mRNA;Acc:NM_001166485]
Coordinates
chr23:27176911-27177420:-
Coord C1 exon
chr23:27177318-27177420
Coord A exon
chr23:27177092-27177181
Coord C2 exon
chr23:27176911-27177009
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTGCTTTTCTCTAGAGC
3' ss Score
10.48
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTCCCCACCTCCCGGGAGTGCGTGGGCTTTGGAGCTGTGCAGGAGGTGCCCGTGGGGCTGGTACAGCCGGCCAGTGCCATCCTGTATGACTACTACAACCCTG
Seq A exon
AGCACAAGTGTTCTGTGTTTTATGGGGCACCACGTAAGAGCAAACTCTTGTCCACGTTGTGCTCTGCGGATGTCTGCCAGTGTGCTGAGG
Seq C2 exon
GGAAGTGCCCTCGACAGCGCCGGGCCCTGGAGCGTGGGCAGCAGGACTTGGAGGGTTACCGGATGAAATTCGCCTGCTACTCTCCCCGAGTGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037533-'48-48,'48-47,49-48=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(37.8=100)
A:
PF076779=A2M_recep=PD(7.8=22.6)
C2:
PF0175916=NTR=PU(9.9=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCGTGGGCTTTGGAG
R:
TAGCAGGCGAATTTCATCCGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]