BtaEX6099859 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6N4]
Coordinates
chr26:16234562-16259901:+
Coord C1 exon
chr26:16234562-16234711
Coord A exon
chr26:16258291-16258451
Coord C2 exon
chr26:16259725-16259901
Length
161 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTTATTCTTTAGGGT
3' ss Score
9.28
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATCCTTTTCAGCAATGGGAAGACATGGAAGGAGATACGGCGCTTCTCCCTCATGACCCTGAGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAAGCCTGCTGCCTGGTGGAGGAGTTGAGAAAAACCAATG
Seq A exon
GGTTGCCCTGTGACCCCACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAACCGTTTTGATTATAAAGATCCAGTTTTTCTAGATCTAATGGAAAGATTGAACGAAATCCTCAGGATTCTGAGCTCTCCATGGGTTCAG
Seq C2 exon
GTTTGCAATAATTTCCCCGCACTCTTTGATTATTTACCAGGAAGTCATAACAAAGTACTTAAAAATGTTGCTAATTTAAAAAGTTTTGTGTTGGAGAAAGCAATGGAACACAAAGCATCCCTGGATATTAACAACCCTCGGGACTATATTGATTGTTTCCTAATCAGAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023955-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAAGGAGATACGGCG
R:
CCAGGGATGCTTTGTGTTCCA
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]