BtaEX6099861 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6N4]
Coordinates
chr26:16231617-16234711:+
Coord C1 exon
chr26:16231617-16231852
Coord A exon
chr26:16234242-16234404
Coord C2 exon
chr26:16234562-16234711
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATGTGTACCTCCTTTCACAGCTT
3' ss Score
8.17
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACCCAGGTTGAATAGCAGGGACTTAGATTTCAGGCTCACAGTCATCTGAGTAAGAAGAGAAGGCGTCAATGGATCTGGCTGTGGTCCTGGTGCTCTGTCTCTCCTGTCTGCTTCTCCTTTCACTTTGGAAACAGAGCTCTGGGAAAGGGAAGCTCCCGCCGGGCCCCACTCCTCTGCCGATTCTTGGAAACATCCTACAGTTAGATGTTAAGAACATCAGCAAATCTTTAACCAAC
Seq A exon
CTTTCAAAAGTCTATGGCCCTGTGTTCACTGTGTATTTTGGCATGAAGCCCATCGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCCCTGATTGATCTGGGAGAGGAGTTTTCTGGAAGAGGAATGTTTCCATTGGCTGAAAGAGCTAATATAGTAAATG
Seq C2 exon
GAATCCTTTTCAGCAATGGGAAGACATGGAAGGAGATACGGCGCTTCTCCCTCATGACCCTGAGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAAGCCTGCTGCCTGGTGGAGGAGTTGAGAAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023955-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.8)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCTGTCTCTCCTGTCT
R:
TCGGTCCTCAATGCTCCTCTT
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]