BtaEX6099866 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16131103-16132779:+
Coord C1 exon
chr26:16131103-16131134
Coord A exon
chr26:16132281-16132443
Coord C2 exon
chr26:16132630-16132779
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACAGGCATCTCCATTCCCAGCTC
3' ss Score
4.43
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TGATTTCTTTCCAGAAATCATTTACTATATTG
Seq A exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTCTGTATTTTGGCATGAACCCCCTGGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCTCTGATCGGCCTGGGAGAGGAGTTTTCTGGAAGAGGCAGTTGCCCAGTGATTCAAAGAGCTTCTAAGGGATATG
Seq C2 exon
GAGTCATTTTCAGCAATGGGAAGATATGGAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGGATTTCGGGATGGGGAAGAGGAGCATGGAGGACCGTGTTCAACAGGAAGCGTGCTGCCTGGTGGAGGAGTTGAGAAAAACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375-'2-2,'2-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(2.2=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]