BtaEX6100224 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20897092-20911428:-
Coord C1 exon
chr26:20911266-20911428
Coord A exon
chr26:20897871-20898020
Coord C2 exon
chr26:20897092-20897252
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGCTTCTTTTCCTAGGAC
3' ss Score
11.33
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
Exon sequences
Seq C1 exon
TTGGCCAAACAATATGGACCTGTTTACACTCTGCACCTTGGATCCCAGACCACTGTGGTCTTACATGGATATGAAGTGGTGAAGGAAGCTCTAATTGACCAAGGTGATGAATTCCTTGGCAGAGCACATTTTCCTATTATTGACGATACCCAGAGAGGATATG
Seq A exon
GACTCATTTTCAGCAATGGAGACACGTGGAAGCAAATGCGGCGCTTCTCCCTTATGACCCTAAGGAACTTTGGGATGGGGAAGAGGAGCCTTGAGGAGAGGATCCAAGAGGAGGCCCAGTTTCTGGTGGAGGAGTTCAGGAAATCAGAGG
Seq C2 exon
CTCAGCCCTTTAACCCTGCTGTCACCCTGTCCTGTGCTACCTGCAACATCATCTGCTCCATCCTCTTCAACGAACGTTTCCACTACCAAGATAAGACCCTTCACTCCCTGCTGGATTTGTTAAATGAAAATTTTAATCGAATAAGCTCTCTCTGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939-'2-6,'2-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGATCCCAGACCACTG
R:
CAGCAGGGAGTGAAGGGTCTT
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]