BtaEX6100314 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003294 | MRPL43
Description
39S ribosomal protein L43, mitochondrial [Source:RefSeq peptide;Acc:NP_776988]
Coordinates
chr26:21688954-21692281:-
Coord C1 exon
chr26:21692055-21692281
Coord A exon
chr26:21689150-21689276
Coord C2 exon
chr26:21688954-21689016
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTCCTCTTCTCCAGGAT
3' ss Score
10.87
5' ss Seq
TTGGTCAGC
5' ss Score
2.52
Exon sequences
Seq C1 exon
TTAATGGGGCTGTGCGCGAGGAGAGCCTCAATTGCAAGTCGGTCGAGGAGATCGCCACGCTGGTGCAGAAGCTGGCCGACCAGTCGGGTTTGGACGTGATCCGCATCCGCAAGCCCTTCCACACGGACAGTCCTAGCATCCAGGGTCAGTGGCACCCCTTCACCAACAAACCGACAGCACTGGGCGGGCTGCGCCCTCGAGAGGTCCAGAATCCTGCCCCGACCCAG
Seq A exon
GATGCGGCTGAGCTCCTCGGTGAAGGAGCAGGGCCCCGCTGGCACTCCATTGTTGCTCTGCCTCAGGAGCACGTAGCTGTTGCCATTCATCCTGCGCAGCCGGCTGGGCAGCGTCACCAGCCCATTG
Seq C2 exon
GACACTGGCCTGAGACTGTCTGCAGCTGCACAGCAGAGCCCCCTGCCCGGCCGGCCCGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003294-'2-3,'2-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.558 C2=0.955
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PD(28.3=19.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAATGGGGCTGTGCGCG
R:
AGACAGTCTCAGGCCAGTGTC
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]