BtaEX6102688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40494538-40496807:-
Coord C1 exon
chr29:40496679-40496807
Coord A exon
chr29:40494714-40495153
Coord C2 exon
chr29:40494538-40494631
Length
440 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTGTTTCCGTTTCAGCTT
3' ss Score
11.36
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATGTAAATGAGTGTCGGAGGCCCCTGGAGAGAAGAGTCTGTCACCATTCCTGCCACAACACCGTGGGCAGCTTCCTGTGCACCTGCCGACCTGGCTTCCGGCTCCGGGCTGACCGAGTGTCCTGTGAAG
Seq A exon
CTTTCCCCAAAGCTGTGCTGGCCCCATCTGCCATCCTGCAGCCTCTGCAGCACCCTCCTAAGATGCTCCTGCTGCTTCCAGAGGCAGGCCGGCCCGCCCTCTCCCCCGGGCACAGCCCTCCTTCCGGGGCTCCGGGGCCCCCGACTGGAGTCAGGAGCACACGACCACCACCTCCCATGCCTGCACTGTCCACGTCCTCCCCTTCTGCCCCGACGCCGCTGCTGTCCACCCCGGTGGCCACCCCCGTGCCGCATCCCTCTCTGCTGGGAACCCTCAGACCTCCCGCACAACTCCAGAAGACGGCGGTGACTCCTCCCTTGCCCAGGGGCCCCGAGACCACACGGCTGGCACCAGGACCCTCTGCCTGTTGGCACCTAGAGGCCACGTATGAGTCAGGGAGCCGCTGGACAGAGCCTGGCTGTTCCCAGTGCTGGTGTGAG
Seq C2 exon
GATGGGGAGGTGACCTGTGAAAAGGTGACGTGTGAAGCTGCTTGCTCCCACCCGATTCCCTCCAGAGATGGAGGGTGCTGCCCATCGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'12-11,'12-10,13-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.707 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
PF0009313=VWC=PU(43.6=16.3)
C2:
PF0009313=VWC=PD(52.7=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAATGAGTGTCGGAGGCC
R:
CTGTACACGATGGGCAGCAC
Band lengths:
222-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]