BtaEX6102690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40485301-40488222:-
Coord C1 exon
chr29:40488105-40488222
Coord A exon
chr29:40487135-40487220
Coord C2 exon
chr29:40485301-40485397
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCTGTCCCCCGCCAGGCT
3' ss Score
9.25
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AACGGGGAGGTAGAATGTTCCTTCACTCCATGTCCGGAACTGGACTGCCCCCGAGAGGAGTGGTGGCTGGGCCCCGGGCAGTGCTGCTATGCCTGCAGGGAACCCGTGCCCATGACAG
Seq A exon
GCTGCTCTCTTGATGACAACGGGGTTGAGTTTCCGGTTGGACAGATCTGGTCTCCCGGTGATCCCTGTGAGTTATGCATCTGCCAG
Seq C2 exon
GCAGATGGCTCAGTGAGCTGCAAGAGGACAGACTGTGTGGACTCCTGCCCTCACCCGATTCGAATCCCCGGACAGTGCTGCCCAGACTGTTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'19-19,'19-18,21-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.5=77.5)
A:
PF0009313=VWC=PU(46.6=93.1)
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCACTCCATGTCCGGAA
R:
CACTGTCCGGGGATTCGAATC
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]